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How to use MODELLER to build DIMER homology model with ligand? Procedure:     Get Fasta sequence from UNIPROT database.     Predict sequence alignment from HHPRED     Prepare INPUT files for MODELLER     model-dimer.py (Click to download) ############### from modeller import * from modeller.automodel import * #from modeller import soap_protein_od env = environ() env.io.hetatm = True a = automodel(env, alnfile='TvLDH-1bdm.ali',               knowns='1bdm',               sequence='TvLDH',               assess_methods=(assess.DOPE,                               #soap_protein_od.Scorer(),                               assess.GA341)) a.md_level = refine.very_slow a.starting_model = 1 a.ending_model = 1   #Number of output models a.final_malign3d = True a.make() ################     TvLDH-1bdm.ali (Click to download) (Alignment taken from SALI LAB) >P1;1bdm structureX:1bdm.pdb: 0: A: 333: B:u

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Modeling and Simulation Software Links

How to compile Pymol 1.8.2.0 on Windows 10 64 bit?

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