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Ambertools installation

Ambertools installation Download AMBERTOOLS using following commands : wget http://ambermd.org/downloads/install_ambertools.sh # Or: curl http://ambermd.org/downloads/install_ambertools.sh -O bash install_ambertools.sh -v 3 --prefix $HOME --non-conda Export AMBERHOME path to .bashrc   : export AMBERHOME=/PATH/TO/amber17                 ## for zsh or bash; export PATH="${PATH}:${AMBERHOME}/bin" OR source the path of AMBERHOME to .bashrc   : source /PATH/TO/amber17/amber.sh Examples Commands that can be used:  am1bcc am1bcc -i mol.ac -f ac -o mol.ac antechamber antechamber -i g98.out -fi gout -o sustiva_resp.prep -fo prepi -c resp antechamber -i g98.out -fi gout -o sustiva_bcc.prep -fo prepi -c bcc antechamber -i g98.out -fi gout -o sustiva_gas.prep -fo prepi -c gas antechamber -i g98.out -fi gout -o sustiva_cm2.prep -fo prepi -c cm2 antechamber -i g98.out -f...

Linux tips and commands

How to install a program on Ubuntu? For example: master pdf editor or any other program =>open terminal type the following command wget http://get.code-industry.net/public/master-pdf-editor-4.0.10_i386.deb Then use dpkg tool to install it. sudo dpkg -i master-pdf-editor-*.deb sudo dpkg -i master-pdf-editor-*.deb If there’s any dependency error, then simply run the command below to fix it. sudo apt -f install How to un-install a program on Ubuntu? For example: master pdf editor 4 or any other program you wish to un-install => open terminal type the following command sudo apt-get remove master-pdf-editor   [enter] it will ask for password: [enter password] Un-install starts ---------------------------------------------- OR---------------------------- =>open terminal type the following command sudo apt-get purge master-pdf-editor   [enter] it will ask for password: [enter password] Un-install starts =======...

Ubuntu / Linux pdf reader / editor

Foxit Reader - View, create, convert, annotate, print, collaborate, share, fill forms and sign. xpdf - Install xpdf "Xpdf is a small and efficient program which uses standard X fonts". Lightweight, but with outdated interface. evince - Install evince Evince is a document viewer for multiple document formats. Used by default on Gnome. kpdf - Install kpdf KPDF is a pdf viewer based on xpdf for KDE 3. gv - Install gv - an old lightweight pdf viewer with an old interface. Size of the package is only 580k. gv is an X front-end for the Ghostscript PostScript(TM) interpreter. okular - Install okular - KDE pdf viewer, requires many KDE prerequisites. Can easily copy text and images. acroread - Adobe Acrobat Reader, no longer supported for Linux by Adobe, seems to be no longer supported by Ubuntu. qpdfview Installation open terminal and type the following commands sudo add-apt-repository ppa:b-eltzner/qpdfview sudo apt-get update sudo apt-get install qp...

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