insilicoengine

JDK Installation Installation of the Java Platform, Standard Edition Development Kit (JDK), allows you to run Java programs on your PC and as you browse in the Internet. To install Oracle JDK with web browser Java support, follow the steps below. Open the terminal windows. Add the software repository by entering the command below, press Enter to confirm.   sudo add-apt-repository ppa:webupd8team/java   Download and update the package information from the software repositories. sudo apt-get update   Install Oracle JDK by entering the command below.   sudo apt-get install oracle-java8-installer   Configure the java command by entering the following command and enter the number representing the choice of Oracle JDK 8. If you only have one version of Java on your machine, you can skip this step.  sudo update-alternatives --config java  Configure the javac command by entering the following command and enter the number repr...

Ambertools installation Download AMBERTOOLS using following commands : wget http://ambermd.org/downloads/install_ambertools.sh # Or: curl http://ambermd.org/downloads/install_ambertools.sh -O bash install_ambertools.sh -v 3 --prefix $HOME --non-conda Export AMBERHOME path to .bashrc   : export AMBERHOME=/PATH/TO/amber17                 ## for zsh or bash; export PATH="${PATH}:${AMBERHOME}/bin" OR source the path of AMBERHOME to .bashrc   : source /PATH/TO/amber17/amber.sh Examples Commands that can be used:  am1bcc am1bcc -i mol.ac -f ac -o mol.ac antechamber antechamber -i g98.out -fi gout -o sustiva_resp.prep -fo prepi -c resp antechamber -i g98.out -fi gout -o sustiva_bcc.prep -fo prepi -c bcc antechamber -i g98.out -fi gout -o sustiva_gas.prep -fo prepi -c gas antechamber -i g98.out -fi gout -o sustiva_cm2.prep -fo prepi -c cm2 antechamber -i g98.out -f...

Foxit Reader - View, create, convert, annotate, print, collaborate, share, fill forms and sign. xpdf - Install xpdf "Xpdf is a small and efficient program which uses standard X fonts". Lightweight, but with outdated interface. evince - Install evince Evince is a document viewer for multiple document formats. Used by default on Gnome. kpdf - Install kpdf KPDF is a pdf viewer based on xpdf for KDE 3. gv - Install gv - an old lightweight pdf viewer with an old interface. Size of the package is only 580k. gv is an X front-end for the Ghostscript PostScript(TM) interpreter. okular - Install okular - KDE pdf viewer, requires many KDE prerequisites. Can easily copy text and images. acroread - Adobe Acrobat Reader, no longer supported for Linux by Adobe, seems to be no longer supported by Ubuntu. qpdfview Installation open terminal and type the following commands sudo add-apt-repository ppa:b-eltzner/qpdfview sudo apt-get update sudo apt-get install qp...