insilicoengine

Membrane Protein Lipid Composition Atlas 1. Archaebacterial membrane 2. Bacterial Gram-negative inner membrane 3. Bacterial Gram-negative outer membrane 4. Bacterial Gram-positive outer membrane 5. Bacterial Gram-positive plasma membrane 6. Chloroplast inner membrane 7. Chloroplast outer membrane 8. Cytoplasmic granule membrane 9. Endoplasmic reticulum membrane 10. Endosome membrane 11. Eukaryotic plasma membrane 12. Golgi membrane 13. Lysosome membrane 14. Mitochondrial inner membrane 15. Mitochondrial outer membrane 16. Nuclear inner membrane 17. ...

Homology model can be validated in multiple ways. Here you will find useful description on how to validate your homology model. Web-servers: UCLA-DOE LAB — SAVES : The Structure Analysis and Verification Server ( New Link ) This metaserver runs 6 programs for checking and validating protein structures during and after model refinement. PROCHECK : Checks the stereochemical quality of a protein structure by analyzing residue-by-residue geometry and overall structure geometry. WHAT_CHECK : Derived from a subset of protein verification tools from the WHATIF program (Vriend, 1990), this does extensive checking of many sterochemical parameters of the residues in the model.   ERRAT : Analyzes the statistics of non-bonded interactions between different atom types and plots the value of the error function versus position of a 9-residue sliding window, calculated by a comparison with statistics from highly refined structures.   VERIFY_3D : Determines the ...